ResistoXplorer

Update History

Example dataset add in ARG Table module (2023‑09‑03);
Code refactoring and Bug fixing based on users data (2023‑04‑10);
Minor bug fixing and code updates (2023‑01‑20);
Bug fixing based on users data (2021‑11‑04);
Minor bug fixed and code refactoring based on users data (2021‑10‑04);
Server upgraded to 32 GB RAM to accommodate more users (2021‑08‑21);
Users bug fixing and minor code updates (2021‑07‑30);
R updated to newer version 4.1.0 (2021‑07‑29);
CARD database annotation in ARG Table module updated to latest version 3.1.3 (2021‑07‑20);
ResFinder database annotation in ARG Table module updated to latest version 4.1 (2021‑06‑18);
Minor code refactoring and Stress value added for the NMDS plot (2021‑05‑22);
Minor bug fixing based on users data(2021‑04‑29);
ResFinder database annotation in ARG Table module updated to 4.1 (2021‑02‑18);
Minor bug fixes (2021‑01‑15);
Minor text updates on interface (2020‑12‑25);
Added support for FAQs section on home page (2020‑12‑22);
Added support for downloading functional annotation information from different databases (Downloads section under Resources) (2020‑12‑18);
Added support for downloading R command history generated during analysis (2020‑12‑12);
DESEq2 set as default option for differential analysis in RNASeq-based methods (2020‑12‑04);
The URL of ResistoXplorer have been changed. The tool is now accessible from: http://www.resistoxplorer.no (2020‑11‑26);
Updated About section (2020‑11‑20);
Minor interface changes and R code refactoring (2020‑11‑12);
Minor bug fixes and interface improvement based on reviewers feedback (2020‑11‑03);
Remove support for Resfams database in ARG Table module (2020‑11‑10);
Minor bug fixes and interface changes (2020‑10‑22);
Added support for Bray-curtis and Jaccard distance for clustering analysis (heatmap and dendrogram visualization) (2020‑10‑18);
Minor bug fixes and Data Filtration page updated in ARG Table module(2020‑10‑02);
Functional annotation information updated for CARD database (2020‑08‑07);
Sample score plot graphics updated and minor big fixes in Integration analysis module (2020‑07‑24);
Minor bug fixes on Data Summary page and and default parameters changed for some analysis (2020‑07‑17);
Interface as well as performance improvement and minor bug fixes (2020‑05‑29);
Updated Data Format section (2020‑04‑20);
Enhanced error handling during parsing of ARG Table input data (2020‑04‑19);
Minor bug fixes and interface improvement based on users feedback (2020‑04‑16);
Enhanced error handling during parsing of ARG List input data (2020‑04‑15);
Updated Manual section and added Data Format on home page (2020‑04‑14);
Added support for generating PDF and SVG images for all major graphical outputs (2020‑04‑08);
Minor bug fixes and interface changes (2020‑04‑07);
Added support to download result tables and statistics generated from several analyses (2020‑04‑06);
ResistoXplorer is now made publicly available for testing purposes (2020‑03‑29);
Updated About section on home page (2020‑03‑22);
Added Tutorials for all three modules (2020‑03‑20);
Added support for Try example datasets for each module (2020‑03‑10);
Code refactoring and major performance improvement (2020‑03‑08);
Added support for functional enrichment analysis in ARG List module (2020‑03‑01);
Added functional annotations support for 11 databases in ARG Table module (2020‑12‑15);
Code refactoring for performance improvement (2020‑11-22);
Added more color palette options for majority of the analyses (2020‑11‑16);
Added support to merge or filter features for composition abundance profiling based on either sum or median abundance (2020‑11‑13);
Added support for interactive co-occurrence network (2020‑11‑10);
Major interface changes and minor bug fixes (2020‑10‑28);
Added Maximal Information Coeffecient (MIC) method for association analysis in Integration analysis module (2020‑10‑06);
Added CCLasso method for association analysis in Integration analysis module (2020‑09‑28);
Added support for association or co-occurrence analysis methods (2020‑09‑21);
Minor bug fixes and Interface updated for Data filtration and normalization (2019‑09‑08);
rCCA & sPLS added to perform vertical data integration based on mixOmics R package (2019‑08‑27);
Fixed the bug and added support for 3D graphics in Procrustes and Co-inertia analysis (2019‑08‑16);
Added Co-inertia analysis for Integration analysis(2019‑08‑13);
Added Procrustes analysis for Integration analysis(2019‑08‑05);
Added Integrative data analysis (multiple file upload) support (2019‑07‑30);
Added support for Random Forest and Support vector machine (SVM) (2019‑07‑18);
Added evenness-based measures on alpha diversity (Pielou & Smith and Wilson’s Evar index) (2019‑07‑08);
Added multiple group testing for ALDEx2 method (2019‑07‑04);
Added support for CoDA based methods i.e., ALDEx2 and ANCOM for statistical analysis (2019‑07‑01);
LEfSe, EdgeR, DESEq2 & metagenomeSeq have been added for differential testing (2019‑06‑25);
Added support for Clustering analysis (Heatmap and Dendrogram) (2019‑06‑12);
Added support for Core resistome analysis (2019‑06‑05);
Interface updated and minor bug fixes (2019‑06‑01);
Added support for log-ratio transformation (i.e., ALR and CLR) for ARG count profile Normalization (2019‑05‑29);
Added support for PCA for ordination analysis (2019‑05‑24);
Added support for rarefaction curve analysis (2019‑05‑22);
Minor bug fix for Sankey and Sunburst chart (2019‑05‑18);
Added Sankey diagram support along with Treemap and Sunburst chart for Hierarchical Composition profiling (2019‑05‑16);
Added support for D3 JavaScript library based visualization (2019‑04‑29);
Added support for Composition profiling using Stacked area and bar plot (2019‑04‑14);
Added support for Diversity analysis (Alpha & Beta) (2019‑04‑10);
Added Data analysis Panel page (2019‑04‑07);
Data Normalization page added (2019‑03‑31);
Data Filtration page added (2019‑03‑22);
Gene count abundance profile upload page and analysis created (2019‑03‑16);
Added support for ARG-microbe interactive network visual exploration (2019‑02‑27);
ARG List upload page and analysis created (2019‑02‑19);
ResistoXplorer home page and template created (2019‑01‑29);